The biological description of proteins and its function

Proteins are the basic functional units of the body. They have various types and have various biological functions Enzymes Almost every chemical reaction between organic bio molecules in living cells are catalysed by enzymes.

The biological description of proteins and its function

Garland Science ; Search term Protein Function We have seen that each type of protein consists of a precise sequence of amino acids that allows it to fold up into a particular three-dimensional shape, or conformation. But proteins are not rigid lumps of material.

They can have precisely engineered moving parts whose mechanical actions are coupled to chemical events. It is this coupling of chemistry and movement that gives proteins the extraordinary capabilities that underlie the dynamic processes in living cells.

In this sectionwe explain how proteins bind to other selected molecules and how their activity depends on such binding. We show that the ability to bind to other molecules enables proteins to act as catalysts, signal receptors, switches, motors, or tiny pumps.

The examples we discuss in this chapter by no means exhaust the vast functional repertoire of proteins. However, the specialized functions of many of the proteins you will encounter elsewhere in this book are based on similar principles. All Proteins Bind to Other Molecules The biological properties of a protein molecule depend on its physical interaction with other molecules.

Thus, antibodies attach to viruses or bacteria to mark them for destruction, the enzyme hexokinase binds glucose and ATP so as to catalyze a reaction between them, actin molecules bind to each other to assemble into actin filaments, and so on.

Indeed, all proteins stick, or bind, to other molecules. In some cases, this binding is very tight; in others, it is weak and short-lived. But the binding always shows great specificity, in the sense that each protein molecule can usually bind just one or a few molecules out of the many thousands of different types it encounters.

The ability of a protein to bind selectively and with high affinity to a ligand depends on the formation of a set of weak, noncovalent bonds—hydrogen bonds, ionic bonds, and van der Waals attractions—plus favorable hydrophobic interactions see Panelpp.

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Because each individual bond is weak, an effective binding interaction requires that many weak bonds be formed simultaneously. This is possible only if the surface contours of the ligand molecule fit very closely to the protein, matching it like a hand in a glove Figure Figure The selective binding of a protein to another molecule.

Many weak bonds are needed to enable a protein to bind tightly to a second molecule, which is called a ligand for the protein. These amino acids can belong to different portions of the polypeptide chain that are brought together when the protein folds Figure And other parts of the protein can serve as a handle to place the protein in a particular location in the cell—an example is the SH2 domain discussed previously, which is often used to move a protein containing it to sites in the plasma membrane in response to particular signals.

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Figure The binding site of a protein. A The folding of the polypeptide chain typically creates a crevice or cavity on the protein surface. This crevice contains a set of amino acid side chains disposed in such a way that they can make noncovalent bonds only more Although the atoms buried in the interior of the protein have no direct contact with the ligandthey provide an essential scaffold that gives the surface its contours and chemical properties.

Even small changes to the amino acids in the interior of a protein molecule can change its three-dimensional shape enough to destroy a binding site on the surface. These interactions fall into two main categories.

Protein Function - Molecular Biology of the Cell - NCBI Bookshelf

First, neighboring parts of the polypeptide chain may interact in a way that restricts the access of water molecules to a ligand binding site. Because water molecules tend to form hydrogen bonds, they can compete with ligands for sites on the protein surface.

Mitochondrial Functions, Oxidative Phosphorylation and Biological Oxidations W H Freeman ;
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Tissue (biology) - Wikipedia Protein secondary structure Secondary structure refers to highly regular local sub-structures on the actual polypeptide backbone chain.

The tightness of hydrogen bonds and ionic interactions between proteins and their ligands is therefore greatly increased if water molecules are excluded.

Initially, it is hard to imagine a mechanism that would exclude a molecule as small as water from a protein surface without affecting the access of the ligand itself. Because of the strong tendency of water molecules to form water—water hydrogen bonds, however, water molecules exist in a large hydrogen-bonded network see Panelpp.

Second, the clustering of neighboring polar amino acid side chains can alter their reactivity.Biological Functions of Proteins. By: Amna Adnan | Category: Others or to move about, and are known as contractile or motile proteins.

Actin and myosin function in the contractile system of skeletal muscle, and are also found in many non-muscle cells.

The biological description of proteins and its function

Structural Proteins In order to give biological structures strength or protection. The biological properties of a protein molecule depend on its physical interaction with other molecules. followed by a general description of allostery in the early s, was revolutionary at the time. The Regulation of Cdk and Src Protein Kinases Shows How a Protein Can Function as a Microchip; Proteins That Bind and Hydrolyze GTP Are.

A variety of common and stable tertiary structures appear in a large number of proteins that are unrelated in both function and evolution - for example, many proteins are shaped like a TIM barrel, named for the enzyme triosephosphateisomerase.

The cell membrane (also known as the plasma membrane or cytoplasmic membrane, and historically referred to as the plasmalemma) is a biological membrane that separates the interior of all cells from the outside environment (the extracellular space) which protects the cell from its environment consisting of a lipid bilayer with embedded cell membrane controls the movement of.

The function of a protein is directly dependent on its threedimensional structure. Remarkably, proteins spontaneously fold up into three-dimensional structures that are determined by the sequence of amino acids in the protein polymer.

To be able to perform their biological function, proteins fold into one or more specific spatial conformations driven by a number of non-covalent interactions such as hydrogen bonding, Therefore, a number of methods for the computational prediction of protein structure from its sequence have been developed.

Biological Functions of Proteins